Comprehensive QC, normalization, and batch correction as needed

Curated data with expert, customized approaches (metadata checks, doublet removal)

Dimensionality reduction (PCA/UMAP/PHATE) and intuitive visualizations

Clustering cells/samples with unsupervised methods and annotated with marker tables

Differential expression across samples, clusters, or cell types

Gene-set enrichment and pathway/TF-motif analysis

Mapped trajectories and cell–cell communication; spatial mapping when available

TCR/BCR clonotypes to phenotypes

High-resolution, publication-quality figures 

Delivered reusable notebooks (.h5ad/.rds) and a concise biological summary aligned to your goals